I'm going to phrase this hypothetically, but it's based on a real scenario:
Suppose you have a collection of software from the late 1980s/early 1990s. The floppy disks have been imaged (and you still have the original media) and a virus check run across the entire collection turns up about a dozen infected files out of a total of ~15,000 files.
Suppose further that you've run some additional analysis and determined that the infected files are
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Not false positives - that is, the virus check results are accurate
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Not duplicates of uninfected files.
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Integral parts of the collection
Now suppose you want to preserve and provide access to those files, including the viruses - with clear warnings about their content, of course. What are some techniques you could use to do so? Build a second environment for infected files? Wrap the files up in a container like WARC, as suggested in a previous question about infected files? [1] Other thoughts?
[1] http://qanda.digipres.org/221/accessioning-materials-discovering-contaminated-materials?show=228#a228